Miguel Rocha

Research interests

Publications

• Generative Deep Learning for Targeted Compound Design

  Journal of Chemical Information and Modeling · 2021 · https://doi.org/10.1021/acs.jcim.0c01496

• Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses

  Molecular Systems Biology · 2021 · https://doi.org/10.15252/msb.20209730

• Deep learning for drug response prediction in cancer

  Briefings in Bioinformatics · 2019 · https://doi.org/10.1093/bib/bbz171

• A Review of Dynamic Modeling Approaches and Their Application in Computational Strain Optimization for Metabolic Engineering

  Frontiers in Microbiology · 2018 · https://doi.org/10.3389/fmicb.2018.01690

• In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories

  Microbiology and Molecular Biology Reviews · 2015 · https://doi.org/10.1128/mmbr.00014-15

• The role of ascorbate peroxidase, guaiacol peroxidase, and polysaccharides in cassava ( Manihot esculenta Crantz) roots under postharvest physiological deterioration

  Food Chemistry · 2015 · https://doi.org/10.1016/j.foodchem.2015.11.025

• Reconstructing genome-scale metabolic models with merlin

  Nucleic Acids Research · 2015 · https://doi.org/10.1093/nar/gkv294

• Metabolomics combined with chemometric tools (PCA, HCA, PLS-DA and SVM) for screening cassava (Manihot esculenta Crantz) roots during postharvest physiological deterioration

  Food Chemistry · 2014 · https://doi.org/10.1016/j.foodchem.2014.03.110

• Turn down the heat: confronting the new climate normal

  University of Twente Research Information · 2014

• Modeling formalisms in Systems Biology

  AMB Express · 2011 · https://doi.org/10.1186/2191-0855-1-45

• Multi‐scale Internet traffic forecasting using neural networks and time series methods

  Expert Systems · 2010 · https://doi.org/10.1111/j.1468-0394.2010.00568.x

• OptFlux: an open-source software platform for in silico metabolic engineering

  BMC Systems Biology · 2010 · https://doi.org/10.1186/1752-0509-4-45

• Natural computation meta-heuristics for the in silico optimization of microbial strains

  BMC Bioinformatics · 2008 · https://doi.org/10.1186/1471-2105-9-499

• Evolution of neural networks for classification and regression

  Neurocomputing · 2007 · https://doi.org/10.1016/j.neucom.2006.05.023

• Integrating Sustainable Development into Existing Management Systems

  Total Quality Management & Business Excellence · 2007 · https://doi.org/10.1080/14783360601051594

• Particle swarms for feedforward neural network training

  Journal · 2003 · https://doi.org/10.1109/ijcnn.2002.1007808

• Preventing Premature Convergence to Local Optima in Genetic Algorithms via Random Offspring Generation

  Lecture notes in computer science · 1999 · https://doi.org/10.1007/978-3-540-48765-4_16

Current projects

No projects listed.