Isabel Rocha

Research interests

Publications

• Ecological modelling approaches for predicting emergent properties in microbial communities

  Nature Ecology & Evolution · 2022 · https://doi.org/10.1038/s41559-022-01746-7

• MEMOTE for standardized genome-scale metabolic model testing

  Nature Biotechnology · 2020 · https://doi.org/10.1038/s41587-020-0446-y

• Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes

  Metabolic Engineering · 2016 · https://doi.org/10.1016/j.ymben.2016.12.002

• Reconstructing genome-scale metabolic models with merlin

  Nucleic Acids Research · 2015 · https://doi.org/10.1093/nar/gkv294

• In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories

  Microbiology and Molecular Biology Reviews · 2015 · https://doi.org/10.1128/mmbr.00014-15

• Metabolic responses to recombinant bioprocesses in Escherichia coli

  Journal of Biotechnology · 2012 · https://doi.org/10.1016/j.jbiotec.2012.08.026

• Modeling formalisms in Systems Biology

  AMB Express · 2011 · https://doi.org/10.1186/2191-0855-1-45

• OptFlux: an open-source software platform for in silico metabolic engineering

  BMC Systems Biology · 2010 · https://doi.org/10.1186/1752-0509-4-45

• Galacto-oligosaccharides production during lactose hydrolysis by free Aspergillus oryzae β-galactosidase and immobilized on magnetic polysiloxane-polyvinyl alcohol

  Food Chemistry · 2008 · https://doi.org/10.1016/j.foodchem.2008.11.068

• Natural computation meta-heuristics for the in silico optimization of microbial strains

  BMC Bioinformatics · 2008 · https://doi.org/10.1186/1471-2105-9-499

• Evolutionary programming as a platform for in silico metabolic engineering

  BMC Bioinformatics · 2005 · https://doi.org/10.1186/1471-2105-6-308

Current projects

No projects listed.