Jaroslav Koča

Research interests

Publications

• Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

  Nucleic Acids Research · 2021 · https://doi.org/10.1093/nar/gkab314

• PDBe: improved findability of macromolecular structure data in the PDB

  Nucleic Acids Research · 2019 · https://doi.org/10.1093/nar/gkz990

• Protein Data Bank: the single global archive for 3D macromolecular structure data

  Nucleic Acids Research · 2018 · https://doi.org/10.1093/nar/gky949

• MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)

  Nucleic Acids Research · 2018 · https://doi.org/10.1093/nar/gky309

• MOLE 2.0: advanced approach for analysis of biomacromolecular channels

  Journal of Cheminformatics · 2013 · https://doi.org/10.1186/1758-2946-5-39

• Reference Simulations of Noncanonical Nucleic Acids with Different χ Variants of the AMBER Force Field: Quadruplex DNA, Quadruplex RNA, and Z-DNA

  Journal of Chemical Theory and Computation · 2012 · https://doi.org/10.1021/ct300275s

• MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels

  Nucleic Acids Research · 2012 · https://doi.org/10.1093/nar/gks363

• MOLE: A Voronoi Diagram-Based Explorer of Molecular Channels, Pores, and Tunnels

  Structure · 2007 · https://doi.org/10.1016/j.str.2007.10.007

• CAVER: a new tool to explore routes from protein clefts, pockets and cavities

  BMC Bioinformatics · 2006 · https://doi.org/10.1186/1471-2105-7-316

Current projects

No projects listed.